T1 MRI tissue probability map

Return to index

Inheritance graph

Defined in file : brainvisa/toolboxes/spm/types/MRI_spm.py

Used in the following processes

CAT12 - Segment
compute brain Volume data (MNI space)
compute Grey / White / CSF / Skull / Scalp Mask
compute Grey / White / CSF / Skull / Scalp Mask
compute Grey / White / CSF / Skull / Scalp Mask
compute one tissue mask
Optimal PiB Reference Region
segmentation choice (spm8 & spm12)
segmentation choice (spm8)
spm12 - Segment
spm8 - New Segment
spm8 - VBM Segmentation

Associated formats

BrainVISA volume formats
gz compressed NIFTI-1 image
NIFTI-1 image

Associated ontology rules

  • brainvisa-3.0 :
    • {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_grey_proba_native
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_white_proba_native
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_csf_proba_native
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_skull_proba_native
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_scalp_proba_native
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_background_proba_native
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_grey_proba_rigid_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_white_proba_rigid_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_csf_proba_rigid_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_skull_proba_rigid_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_scalp_proba_rigid_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_background_proba_rigid_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_grey_proba_affine_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_white_proba_affine_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_csf_proba_affine_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_skull_proba_affine_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_scalp_proba_affine_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_background_proba_affine_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_grey_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_white_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_csf_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_skull_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_scalp_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_background_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_grey_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_white_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_csf_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_skull_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_scalp_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_background_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_grey_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_white_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_csf_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_skull_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_scalp_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_background_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_grey_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_white_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_csf_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_skull_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_scalp_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_background_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_grey_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_white_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_csf_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_skull_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_scalp_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_background_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_grey_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_white_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_csf_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_skull_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_scalp_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_background_proba_warped_without_modulation
  • brainvisa-3.1.0 :
    • {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_grey_proba_native
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_white_proba_native
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_csf_proba_native
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_skull_proba_native
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_scalp_proba_native
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_background_proba_native
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_grey_proba_rigid_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_white_proba_rigid_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_csf_proba_rigid_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_skull_proba_rigid_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_scalp_proba_rigid_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_background_proba_rigid_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_grey_proba_affine_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_white_proba_affine_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_csf_proba_affine_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_skull_proba_affine_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_scalp_proba_affine_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_background_proba_affine_registered
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_grey_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_white_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_csf_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_skull_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_scalp_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_background_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_grey_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_white_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_csf_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_skull_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_scalp_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_background_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_grey_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_white_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_csf_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_skull_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_scalp_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/<subject>_background_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_grey_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_white_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_csf_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_skull_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_scalp_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_background_proba_warped_with_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_grey_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_white_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_csf_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_skull_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_scalp_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_background_proba_warped_with_affine_and_non_linear_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_grey_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_white_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_csf_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_skull_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_scalp_proba_warped_without_modulation
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/<subject>_background_proba_warped_without_modulation

    Key attributes

  • brainvisa-3.0 :
    • center ,  subject ,  analysis ,  acquisition ,  template ,  tissue_class ,  transformation ,  modulation ,  warping_method
  • brainvisa-3.1.0 :
    • center ,  subject ,  analysis ,  acquisition ,  template ,  tissue_class ,  transformation ,  modulation ,  warping_method